CDS

Accession Number TCMCG048C26489
gbkey CDS
Protein Id XP_031288188.1
Location complement(join(216806..217006,217313..217465,218561..218763,219514..219640,220659..220769,221059..221130,221231..221320,221426..221536,221606..222160,222630..223634))
Gene LOC116146891
GeneID 116146891
Organism Pistacia vera

Protein

Length 875aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA578116
db_source XM_031432328.1
Definition DNA mismatch repair protein MSH2 isoform X1 [Pistacia vera]

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08735        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000018        [VIEW IN EMBL-EBI]
GO:0000217        [VIEW IN EMBL-EBI]
GO:0000400        [VIEW IN EMBL-EBI]
GO:0000403        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0000406        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006290        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006301        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006311        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010520        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010639        [VIEW IN EMBL-EBI]
GO:0010948        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032137        [VIEW IN EMBL-EBI]
GO:0032138        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032301        [VIEW IN EMBL-EBI]
GO:0032302        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035822        [VIEW IN EMBL-EBI]
GO:0040020        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045128        [VIEW IN EMBL-EBI]
GO:0045786        [VIEW IN EMBL-EBI]
GO:0045835        [VIEW IN EMBL-EBI]
GO:0045910        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051053        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051129        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051445        [VIEW IN EMBL-EBI]
GO:0051447        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0051783        [VIEW IN EMBL-EBI]
GO:0051784        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060631        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0110029        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2000242        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCGACAATTGGGCAGTGGATCTGATGCTCTTTCCAGTATAAGTGTTATTAAGAACATGTTTGAAACAATTGCTCGTGATGTTCTTCTGGAGAGAACAGACCACACTCTTGAGCTGTATGAGGGTAGTGGCTCAAATTGGAAACTGGTGAAAAGTGGAACTCCTGGTAATCTAGGAAGTTTTGAAGATGTTCTGTTTGCTAACAATGAGATGCAGGATTCCCCTGTCGTAGTTGCACTATGTCCAAACTTCCGTGAAAATGGATGCACTGTTGGGTTGGGTTATATTGATTTAACTAAGAGAGTACTTGGAGTGGCTGAATTTCTTGATGATAGCCACTTTACAAATTTGGAATCATCTTTGGTTGCTCTTGGTTGTAAGGAATGCCTTTTGCCTATAGAGTCTGGAAAGTCTAGTGAGTGTAGACCTCTGATTGATGCTTTGACCAGATGCGGTGTGATGTTAACTGAGAGAAAGAAAAATGAGTTTAAAACAAGGGATTTAGTGCAGGATCTTGGTAGGCTGGTTAAAGGTTCCATTGAACCAGTTCGAGATTTGATTTCTTGTTTTGAATTTGCTCCTGGTTCTTTAGGGGCGTTATTGTCTTACGCTGAGTTACTTGCAGATGAGAGCAATTATGGAAGTTATTCAATTCGAAAGTACAATCTAGAAAGCTACATGAGGTTGGATTCTGCTGCTATGAGGGCACTAAATGTCATGGAAAGCAAAACTGATGCAAACAAGAATTTCAGTTTGTTTGGTCTCCTGAATAGAACCTGTACTGCTGGGATGGGAAAGCGATTACTTCATATGTGGTTAAAGCAGCCTTTATTAGATGTGAATGAAATAAATGCCAGGCTGGACCTGGTACAAGCATTTGTTGAAGATACTGCACTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATCTCTGATATAGAACGACTGATGCATAACCTTGGGAGGAGAAGAGCTGGTCTGCAGCATATAGTAAAACTTTATCAGTCAAGTATCCGACTTCCATACATTAGAAATGCCCTGCAACAGTATGATGGACAGTTTTCATTGTTGATCAAGGAAAGGTATTTAGATCCGCTGGAGGTTTTAACTGATGATGATCATTTGAATAAGTTCATTGGTCTGGTAGAAGCTTCTGTTGACCTTGATCAACTTGAAAATGGAGAATACATGATCTCATCAAGTTATGATCCTGCTTTATCAGCGCTAAAAGATGAGCAGGAGTCTCTGGATTGCCAAATACACAGTTTGCATAAACAAACAGCTTATGACCTTGATTTGCCTCTAGATAAGGCCTTGAAGTTAGATAAAGGCACACAGTTTGGACATGTCTTCAGAATTACAAAGAAGGAAGAACCAAAAATAAGGAAAAAGCTCAGTACTCAATTTATTGTCCTCGAAACACGGAAAGATGGAGTGAAATTCACTAATACAAAGCTTAAAAAATTAGGGGACCAGTACCAAAAAGTTCTTGACGAGTACAAGAATTGTCAAAAAGAGCTTGTTAACCGAGTTGTTCAAACTGCAGCAAGTTTCTCTGAGGTATTCGAGTCTTTGGCTGGCTTGCTTTCGGAATTGGACGTCTTGCTCAGTTTTGCTGATTTAGCTTCCAGTTGTCCAACTCCATACACAAGACCAGACATCAATCCACCCGATGTGGGAGATATTATATTAGAAGGGAGTAGACACCCTTGTGTCGAAGCACAAGATTGGGTGAATTTTATACCAAATGATTGTAAACTTATCAGAGGAAAGAGTTGGTTTCAGATCATCACTGGACCTAACATGGGTGGAAAGTCCACATTTATTCGGCAGATTGGTGTAAATGTTTTGATGGCACAAGTTGGTTCTTTTGTTCCTTGTGACAAAGCTAGCATTTCTGTACGTGATTGCATTTTTGCTCGTGTTGGTGCTGGTGACTGCCAACTACGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTGAAGGGAGCTACCGATAAGTCATTGATAATCATTGATGAATTGGGACGTGGGACATCAACTTATGATGGATTTGGTTTAGCGTGGGCTATATGTGAGCACCTGGTTGAAGTGATTAGAGCACCGACTTTGTTTGCAACCCACTTCCATGAATTGACTGCATTAGCTGATGAAAATGCCAATCATGAACTCCATACAAAGCAAATTGGTGGTGTGGCCAACTATCATGTCAGTGCACATATTGACTTGTCAAGTCGCAAGTTGACTATGTTGTACAAGGTTGAACCAGGGGCTTGTGATCAAAGTTTTGGTATTCATGTTGCAGAATTTGCAAATTTTCCTGAAAGTGTTGTTGCCCTTGCTAGAGAAAAAGCTGCTGAATTGGAAGATTTCTCGCCTTCTGCAGTAACTTCAAATGATTCTAAAGAGGAGGTGGGATCCAAAAGAAAGAGAGTGAGCGATCCCAGTGACATGTCCAAAGGTGCAGCCCGGGCTCACGAATTTCTGAAGAAATTCTCTGATTTGCCATTAGAGAAAATGGACTTGCAGCAGGCTCTGCAACAAGTAAAAAAGATGAAGGATGACTTGGAGAAAGATGCAGTAGACTGCGACTGGCTCCAGCAATTCCTCTAG
Protein:  
MRQLGSGSDALSSISVIKNMFETIARDVLLERTDHTLELYEGSGSNWKLVKSGTPGNLGSFEDVLFANNEMQDSPVVVALCPNFRENGCTVGLGYIDLTKRVLGVAEFLDDSHFTNLESSLVALGCKECLLPIESGKSSECRPLIDALTRCGVMLTERKKNEFKTRDLVQDLGRLVKGSIEPVRDLISCFEFAPGSLGALLSYAELLADESNYGSYSIRKYNLESYMRLDSAAMRALNVMESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDLVQAFVEDTALRQDLRQHLKRISDIERLMHNLGRRRAGLQHIVKLYQSSIRLPYIRNALQQYDGQFSLLIKERYLDPLEVLTDDDHLNKFIGLVEASVDLDQLENGEYMISSSYDPALSALKDEQESLDCQIHSLHKQTAYDLDLPLDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLDEYKNCQKELVNRVVQTAASFSEVFESLAGLLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQIGVNVLMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIRAPTLFATHFHELTALADENANHELHTKQIGGVANYHVSAHIDLSSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSAVTSNDSKEEVGSKRKRVSDPSDMSKGAARAHEFLKKFSDLPLEKMDLQQALQQVKKMKDDLEKDAVDCDWLQQFL